Star Trek: 71 Crossroad
First published on September 1, 1994 and written by and contains
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Storyline:

The crew of the Nautilus, a battered Starship of mysterious origin, is beamed aboard the Starship Enterprise. The group claims they are freedom fighters from the future working to save the Federation from the Consilium, a group of corrupt power-seekers.

The Nautilus crew members then seize control of the U.S.S. Enterprise, and a Starship from the future arrives to arrest the renegades. Kirk must separate his true allies from those who wish to destroy the Federation.